.

Some works using TREEFINDER:

1. Abby SS, Tannier E, Gouy M, Daubin V. Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. 2010. BMC Bioinformatics 11(1):324.
2. Abby SS, Tannier E, Gouy M, Daubin V. Lateral gene transfer as a support for the tree of life. 2012. PNAS 109:4962-4967.
3. Abdel-Basset R, Friedl T, Mohr KI, Rybalka N, Martin W. High growth rate, photosynthesis rate and increased hydrogen(ases) in manganese deprived cells of a newly isolated Nostoc-like cyanobacterium (SAG 2306). 2011. International J. Hydrogen Energy 36(19):12200-12210.
4. Abe KT, Mariguela TC, Avelino GS, Castro R, Oliveira C. Multilocus molecular phylogeny of Gasteropelecidae (Ostariophysi: Characiformes) reveals the existence of an unsuspected diversity. 2013. Mol. Phylogenet. Evol. 0(0):???-???.
5. Aikawa T, Anbutsu H, Nikoh N, Kikuchi T, Shibata F, Fukatsu T. Longicorn beetle that vectors pinewood nematode carries many Wolbachia genes on an autosome. 2009. Proc. Biol. Sci. 276(1674):3791-3798.
6. Akanuma S, Nakajima Y, Yokobori S, Kimura M, Nemoto N, Mase T, Miyazono K, Tanokura M, Yamagishi A. Experimental evidence for the thermophilicity of ancestral life. 2013. PNAS 110:11067-11072.
7. Aleshin VV, Mikhailov KV, Konstantinova AV, Nikitin MA, Rusin LY, Buinova DA, Kedrova OS, Petrov NB. On the phylogenetic position of insects in the Pancrustacea clade. 2009. Molecular Biology 43(5):866-881.
8. Allegrucci G, Rampini M, Gratton P, Todisco V, Sbordoni V. Testing phylogenetic hypotheses for reconstructing the evolutionary history of Dolichopoda cave crickets in the eastern Mediterranean. 2009. Journal of Biogeography 36(9):1785-1797.
9. Almeida FC, Giannini NP, DeSalle R, Simmons NB. Evolutionary relationships of the old world fruit bats (Chiroptera, Pteropodidae): Another star phylogeny? 2011. BMC Evolutionary Biology 11(1):281.
10. Alstrom P, Davidson P, Duckworth JW, Eames JC, Le TT, Nguyen C, Olsson U, Robson C, Timmins R. Description of a new species of Phylloscopus warbler from Vietnam and Laos. 2009. Ibis 152(1):145-168.
11. Alstrom P, Fjeldsa, J, Fregin S, Olsson U. Gross morphology betrays phylogeny: the Scrub Warbler Scotocerca inquieta is not a cisticolid. 2011. Ibis 153(1):87-97.
12. Alstrom P, Fregin S, Norman JA, Ericson PG, Christidis L, Olsson U. Multilocus analysis of a taxonomically densely sampled dataset reveal extensive non-monophyly in the avian family Locustellidae. 2011. Mol. Phylogenet. Evol. 58(3):513-526.
13. Alstrom P, Olsson U, Lei F, Wang HT, Gao W, Sundberg P. Phylogeny and classification of the Old World Emberizini (Aves, Passeriformes). 2008. Mol. Phylogenet. Evol. 47(3):960-973.
14. Alstrom P, Saitoh T, Williams D, Nishiumi I, Shigeta Y, Ueda K, Irestedt M, Bjorklund M, Olsson U. The Arctic Warbler Phylloscopus borealis - three anciently separated cryptic species revealed. 2011. Ibis 153(2):395-410.
15. Alvarez N, Benrey B, Hossaert-McKey M, Grill A, McKey D, Galtier N. Phylogeographic support for horizontal gene transfer involving sympatric bruchid species. 2006. Biol. Direct 1:21.
16. Amaro RC, Cassimiro J, Verdade VK, Rodrigues MT. On the Generic Identity of Strabomantis aramunha Cassimiro, Verdade, and Rodrigues 2008 (Anura, Strabomantidae). 2013. J. Herpetology 0(0):???-???.
17. Amaro RC, Rodrigues MT, Yonenaga-Yassuda Y, Carnaval AC. Demographic processes in the montane Atlantic rainforest: molecular and cytogenetic evidence from the endemic frog Proceratophrys boiei. 2012. Mol. Phylogenet. Evol. 62(3):880-888.
18. Amouric A, Brochier-Armanet C, Johnson DB, Bonnefoy V, Hallberg KB. Phylogenetic and genetic variation among Fe(II)-oxidizing acidithiobacilli supports the view that these comprise multiple species with different ferrous iron oxidation pathways. 2011. Microbiology 157(Pt 1):111-122.
19. Andreone F, Rosa GM, Noel J, Crottini A, Vences M, Raxworthy CJ. Living within fallen palm leaves: the discovery of an unknown Blommersia (Mantellidae: Anura) reveals a new reproductive strategy in the amphibians of Madagascar. 2010. Naturwissenschaften 97(6):525-543.
20. Angelici FM, Cabras PA, Trucchi E. Records of crested porcupine, Hystrix cristata, in Sardinia. 2009. Mammalia 73(4):377-379.
21. Anisimova M, Kosiol C. Investigating protein-coding sequence evolution with probabilistic codon substitution models. 2008. Mol. Biol. Evol. 26(2):255-271.
22. Anker A, Baeza JA. Molecular and morphological phylogeny of hooded shrimps, genera Betaeus and Betaeopsis (Decapoda, Alpheidae): testing the center of origin biogeographic model and evolution of life history traits. 2012. Mol. Phylogenet. Evol. 0(0):???-???.
23. Antonini G, Coletti G, Serrani L, Tronci C, Cristofaro M, Smith L. Using molecular genetics to identify immature specimens of the weevil Ceratapion basicorne (Coleoptera: Apionidae). 2009. Biological Control 51(1):152-157.
24. Arp G, Bissett A, Brinkmann N, Cousin S, de Beer D, Friedl T, Mohr KI, Neu TR, Reimer A, Shiraishi F, Stackebrandt E, Zippel B. Tufa-forming biofilms of German karstwater streams: microorganisms, exopolymers, hydrochemistry and calcification. 2010. Geological Society, London, Special Publications 336:83-118.
25. Arroyo JI, Hoffmann FG, Opazo JC. Gene duplication and positive selection explains unusual physiological roles of the relaxin gene in the European rabbit. 2012. J. Molecular Evolution 74(1-2):52-60.
26. Arroyo JI, Hoffmann FG, Opazo JC. Gene turnover and differential retention in the relaxin/insulin-like gene family in primates. 2012. Mol. Phylogenet. Evol. 63(3):768-776.
27. Asiimwe T, Krause K, Schlunk I, Kothe E. Modulation of ethanol stress tolerance by aldehyde dehydrogenase in the mycorrhizal fungus Tricholoma vaccinum. 2011. Mycorrhiza 22(6):471-484.
28. Audisio P, Brustel H, Carpaneto GM, Coletti G, Mancini E, Trizzino M, Antonini G, DeBiase A. Data on molecular taxonomy and genetic diversification of the European Hermit beetles, a species complex of endangered insects (Coleoptera: Scarabaeidae, Cetoniinae, Osmoderma). 2009. J. Zool. Syst. Evol. Res. 47(1):88-95.
29. Audisio P, Trizzino M, De Biase A, Rossetti G, Mancini E, Antonini G. Molecular and morphological evidence of a new sibling species of Calobius (Coleoptera: Hydraenidae) of the C. quadricollis complex from peninsular Italy. 2010. Italian Journal of Zoology 77(1):29-37.
30. Audzijonyte A, Daneliya ME, Vainola R. Comparative phylogeography of Ponto-Caspian mysid crustaceans: isolation and exchange among dynamic inland sea basins. 2006. Molecular Ecology 15(10):2969–2984.
31. Bachy C, Dolan JR, Lopez-Garcia P, Deschamps P, Moreira D. Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study. 2012. The ISME Journal 7(2):244-255.
32. Bachy C, Gomez F, Lopez-Garcia P, Dolan JR, Moreira D. Molecular phylogeny of Tintinnid ciliates (Tintinnida, Ciliophora). 2012. Protist 163:873-887.
33. Bachy C, Lopez-Garcia P, Vereshchaka A, Moreira D. Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the north pole at the end of the polar night. 2011. Front. Microbiol. 2:106.
34. Badali H, Carvalho VO, Vicente V, Attili-Angelis D, Kwiatkowski IB, Gerrits Van Den Ende AH, De Hoog GS. Cladophialophora saturnica sp. nov., a new opportunistic species of Chaetothyriales revealed using molecular data. 2008. Med. Mycol. 47(1):51-62.
35. Baeza JA, Bolanos JA, Hernandez JE, Lopez R. A new species of Lysmata (Crustacea, Decapoda, Hippolytidae) from Venezuela, southeastern Caribbean Sea. 2009. Zootaxa 2240:60-68.
36. Ball SG, Subtil A, Bhattacharya D, Moustafa A, Weber AP, Gehre L, ... Dauvillee D. 2013. Metabolic Effectors Secreted by Bacterial Pathogens: Essential Facilitators of Plastid Endosymbiosis? The Plant Cell Online 25(1):7-21.
37. Bannikova AA, Lebedev VS, Lissovsky AA, Matrosova V, Abramson NI, Obolenskaya EV, Tesakov AS. Molecular phylogeny and evolution of the Asian lineage of vole genus Microtus (Rodentia: Arvicolinae) inferred from mitochondrial cytochrome b sequence. 2010. Biol. J. Linnean Society 99(3):595-613.
38. Bannikova AA, Sizhazheva AM, Malikov VG, Golenishchev FN, Dzuev RI. ... (Mammalia, Arvicolinae) ... . 2013. Genetika 49(5):649-664.
39. Barco A, Claremont M, Reid DG, Houart R, Bouchet P, Williams ST, Cruaud C, Couloux A, Oliverio M. A molecular phylogenetic framework for the Muricidae, a diverse family of carnivorous gastropods. 2010. Mol. Phylogenet. Evol. 56(3):1025-1039.
40. Bataille A, Cunningham AA, Cedeno V, Patino L, Constantinou A, Kramer LD, Goodman SJ. Natural colonization and adaptation of a mosquito species in Galapagos and its implications for disease threats to endemic wildlife. 2009. Proc. Natl. Acad. Sci. USA 106(25):10230-10235.
41. Beaufort L, Probert I, de Garidel-Thoron T, Bendif EM, Ruiz-Pino D, et al.. Sensitivity of coccolithophores to carbonate chemistry and ocean acidification. 2011. Nature 476:80-83.
42. Baum BR, Johnson DA, Bailey GL. Ancient differentiation of the H and I haplomes in diploid Hordeum species based on 5S rDNA. 2005. Genome 48(4):610-618.
43. Baurain D, Brinkmann H, Petersen J, Rodriguez-Ezpeleta N, Stechmann A, Demoulin V, Roger AJ, Burger G, Lang BF, Philippe H. Phylogenomic evidence for separate acquisition of plastids in cryptophytes, haptophytes and stramenopiles. 2010. Mol. Biol. Evol. 27(7):1698-1709.
44. Baurain D, Brinkmann H, Philippe H. Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors? 2007. Mol. Biol. Evol. 24(1):6-9.
45. Belinky F, Rot C, Ilan M, Huchon D. The complete mitochondrial genome of the demosponge Negombata magnifica (Poecilosclerida). 2008. Mol. Phylogenet. Evol. 47(3):1238-1243.
46. Bendif EM, Probert I, Herve A, Billard C, Goux D, Lelong C, Cadoret JP, Veron B. Integrative taxonomy of the Pavlovophyceae (Haptophyta): a reassessment. 2011. Protist 162(5):738-761.
47. Ben Hania W, Ghodbane R, Postec A, Brochier-Armanet C, Hamdi M, Fardeau ML, Ollivier B. Cultivation of the first mesophilic representative ("mesotoga") within the order Thermotogales. 2011. Syst. Appl. Microbiol. 34(8):581-585.
48. Benzerara K, Chapon V, Moreira D, Lopez-Garcia P, Guyot F, Heulin T. Microbial diversity on the Tatahouine meteorite. 2006. Meteoritics and Planetary Science 41(8):1249–1265.
49. Benziger A, Philip S, Raghavan R, Anvar Ali PH, Sukumaran M, et al.. Unraveling a 146 years old taxonomic puzzle: validation of Malabar snakehead, species-status and its relevance for channid systematics and evolution. 2011. PLoS ONE 6(6):e21272.
50. Betancur-R. R, Li C, Munroe TA, Ballesteros JA, Orti G. Addressing gene tree discordance and non-stationarity to resolve a multi-locus phylogeny of the flatfishes (Teleostei: Pleuronectiformes). 2013. Syst. Biol. 62:763-785.
51. Biedrzycka A, Kloch A, Migalska M, Bielanski W. Molecular characterization of putative Hepatozoon sp. from the sedge warbler (Acrocephalus schoenobaenus). 2013. Parasitology 1-4.
52. Biggs JS, Watkins M, Puillandre N, Ownby JP, Lopez-Vera E, Christensen S, Moreno KJ, Bernaldez J, Licea-Navarro A, Corneli PS, Olivera BM. Evolution of Conus peptide toxins: Analysis of Conus californicus Reeve, 1844. 2010. Mol. Phylogenet. Evol. 56(1):1-12.
53. Biruma M, Martin T, Fridborg I, Okori P, Dixelius C. Two loci in sorghum with NB-LRR encoding genes confer resistance to Colletotrichum sublineolum. 2012. TAG Theoretical and Applied Genetics 124(6):1005-1015.
54. Blanga-Kanfi S, Miranda H, Penn O, Pupko T, DeBry RW, Huchon D. Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades. 2009. BMC Evol. Biol. 9:71.
55. Blank M, Bastrop R. Phylogeny of the mud worm genus Marenzelleria (Polychaeta, Spionidae) inferred from mitochondrial DNA sequences. 2009. Zoologica Scripta 38(3):313-321.
56. Blank M, Jurss K, Bastrop R. A mitochondrial multigene approach contributing to the systematics of the brook and river lampreys and the phylogenetic position of Eudontomyzon mariae. 2008. Canadian Journal of Fisheries and Aquatic Sciences 65(12):2780-2790.
57. Blower TR, Short FL, Rao F, Mizuguchi K, Pei XY, Fineran PC, Luisi BF, Salmond GPC. Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes. 2012. Nucleic Acids Res. 40:6158-6173.
58. Bobay LM, Rocha EP, Touchon M. The adaptation of temperate bacteriophages to their host genomes. 2013. Mol. Biol. Evol. 30(4):737-751.
59. Bodyl A, Mackiewicz P, Stiller JW. Comparative genomic studies suggest that the cyanobacterial endosymbionts of the amoeba Paulinella chromatophora possess an import apparatus for nuclear-encoded proteins. 2009. Plant Biology 0(0):???-???.
60. Boeckmann B, Robinson-Rechavi M, Xenarios I, Dessimoz C. Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees. 2011. Brief Bioinform. 12:423-435.
61. Boileau C, Eme L, Brochier-Armanet C, Janicki A, Zhang CC, Latifi A. A eukaryotic-like sulfiredoxin involved in oxidative stress responses and in the reduction of the sulfinic form of 2-Cys peroxiredoxin in the cyanobacterium Anabaena PCC 7120. 2011. New Phytologist 191(4):1108-1118.
62. Bologna MA, Oliverio M, Pitzalis M, Mariottini P. Phylogeny and evolutionary history of the blister beetles (Coleoptera, Meloidae). 2008. Mol. Phylogenet. Evol. 48(2):679-693.
63. Bondre VP, Sapkal GN, Yergolkar PN, Fulmali PV, Sankararaman V, Ayachit VM, Mishra AC, Gore MM. Genetic characterization of Bagaza virus (BAGV) isolated in India and evidence of anti-BAGV antibodies in sera collected from encephalitis patients. 2009. J. Gen. Virol. 90(Pt 11):2644-2649.
64. Borden WC, Krebs RA. Phylogeography and postglacial dispersal of smallmouth bass (Micropterus dolomieu) into the Great Lakes. 2009. Can. J. Fish. Aquat. Sci. 66(12):2142-2156.
65. Borrel G, O'Toole PW, Harris HM, Peyret P, Brugere JF, Gribaldo S. Phylogenomic data support a seventh order of methylotrophic methanogens and provide insights into the evolution of methanogenesis. 2013. Genome Biology and Evolution, evt128.
66. Bourlat SJ, Juliusdottir T, Lowe CJ, Freeman R, Aronowicz J, Kirschner M, Lander ES, Thorndyke M, Nakano H, Kohn AB, Heyland A, Moroz LL, Copley RR, Telford MJ. Deuterostome phylogeny reveals monophyletic chordates and the new phylum Xenoturbellida. 2006. Nature 444:85-88.
67. Boussau B, Gouy M. What genomes have to say about the evolution of the Earth. 2012. Gondwana Research 21(2–3):483-494.
68. Boyer M, Gimenez G, Suzan-Monti M, Raoult D. Classification and determination of possible origins of ORFans through analysis of nucleocytoplasmic large DNA viruses. 2010. Intervirology 53:310-320.
69. Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D. Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. 2009. Proc. Natl. Acad. Sci. USA 106(51):21848-21853.
70. Braband A, Cameron SL, Podsiadlowski L, Daniels SR, Mayer G. The mitochondrial genome of the onychophoran Opisthopatus cinctipes (Peripatopsidae) reflects the ancestral mitochondrial gene arrangement of Panarthropoda and Ecdysozoa. 2010. Mol. Phylogenet. Evol. 57(1):285-292.
71. Bradley ME, Rest JS, Li WH, Schwartz NB. Sulfate activation enzymes: phylogeny and association with pyrophosphatase. 2009. J. Mol. Evol. 68(1):1-13.
72. Brandao SN, Sauer J, Schon I. Circumantarctic distribution in Southern Ocean benthos? A genetic test using the genus Macroscapha (Crustacea, Ostracoda) as a model. 2010. Mol. Phylogenet. Evol. 55(3):1055-1069.
73. Briee C, Moreira D, Lopez-Garcia P. Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond. 2007. Res. Microbiol. 158(3):213-227.
74. Brindefalk B, Viklund J, Larsson D, Thollesson M, Andersson SG. Origin and evolution of the mitochondrial aminoacyl-tRNA synthetases. 2007. Mol. Biol. Evol. 24(3):743-756.
75. Brinkmann H, Philippe H. Animal phylogeny and large-scale sequencing: progress and pitfalls. 2008. J. Syst. Evol. 46(3):274–286.
76. Brochier-Armanet C, Deschamps P, Lopez-Garcia P, Zivanovic Y, Rodriguez-Valera F, et al.. Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea. 2011. The ISME Journal 5:1291-1302.
77. Brouard JS, Otis C, Lemieux C, Turmel M. The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae. 2010. Genome Biol. Evol. 2:240-256.
78. Brouard JS, Otis C, Lemieux C, Turmel M. The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the Chaetophorales. 2011. Genome Biol. Evol. 3:505-515.
79. Brown DM, Brenneman RA, Koepfli KP, Pollinger JP, Mila B, Georgiadis NJ, Louis EE, Grether GF, Jacobs DK, Wayne RK. Extensive population genetic structure in the giraffe. 2007. BMC Biology 5:57.
80. Burki F, Inagaki Y, Brate J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K. Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, Telonemia and Centroheliozoa, are related to photosynthetic Chromalveolates. 2009. Gen. Biol. Evol. 2009:231-238.
81. Burki F, Pawlowski J. Monophyly of rhizaria and multigene phylogeny of unicellular bikonts. 2006. Mol. Biol. Evol. 23(10):1922-1930.
82. Burki F, Shalchian-Tabrizi K, Minge M, Skjaeveland A, Nikolaev SI, Jakobsen KS, Pawlowski J. Phylogenomics reshuffles the eukaryotic supergroups. 2007. PLoS ONE 2(8):e790.
83. Burki F, Shalchian-Tabrizi K, Pawlowski J. Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. 2008. Biol. Lett. 4(4):366-369.
84. Buschiazzo E, Gemmell NJ. Evolutionary and phylogenetic significance of platypus microsatellites conserved in mammalian and other vertebrate genomes. 2009. Australian Journal of Zoology 57(4):175-184.
85. Caikovski M, Yokthongwattana C, Habu Y, Nishimura T, Mathieu O, Paszkowski J. Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants. 2008. PLoS Genet. 4(8):e1000165.
86. Calderon I, Turon X, Lessios HA. Characterization of the sperm molecule bindin in the sea urchin genus Paracentrotus. 2009. J. Mol. Evol. 68(4):366-376.
87. Calderon I, Ventura CR, Turon X, Lessios HA. Genetic divergence and assortative mating between colour morphs of the sea urchin Paracentrotus gaimardi. 2010. Mol. Ecol. 19(3):484-493.
88. Calenda G, Peng J, Redman CM, Sha Q, Wu X, Lee S. Identification of two new members, XPLAC and XTES, of the XK family. 2006. Gene 370:6-16.
89. Califice S, Baurain D, Hanikenne M, Motte P. A single ancient origin for prototypical serine/arginine-rich splicing factors. 2012. Plant Physiology 158:546-560.
90. Calvo M, Templado J, Oliverio M, Machordom A. Hidden Mediterranean biodiversity: molecular evidence for a cryptic species complex within the reef building vermetid gastropod Dendropoma petraeum (Mollusca: Caenogastropoda). 2009. Biological Journal of the Linnean Society 96(4):898-912.
91. Cardoso YP, Brancolini F, Protogino L, Lizarralde M. Actinopterygii, Siluriformes, Loricariidae, Hypostomus aspilogaster (Cope, 1894). Distribution extension and first record for Argentina. 2011. Check List J. species lists and distribution 7(5):596-598.
92. Cardoso YP, Montoya-Burgos JI. Unexpected diversity in the catfish Pseudancistrus brevispinis reveals dispersal routes in a Neotropical center of endemism: the Guyanas Region. 2009. Molecular Ecology 18(5):947-964.
93. Carlos F, Suarez M, Patarroyo MA, Patarroyo ME. Characterisation and comparative analysis of MHC-DPA1 exon 2 in the owl monkey (Aotus nancymaae). 2011. Gene 470(1–2):37-45.
94. Carvalho-Costa LF, Piorski NM, Willis SC, Galetti PM, Orti G. Molecular systematics of the neotropical shovelnose catfish genus Pseudoplatystoma Bleeker 1862 based on nuclear and mtDNA markers. 2011. Mol. Phylogenet. Evol. 59(1):177-194.
95. Caspersen CS, Reznik B, Weldy PL, Abildskov KM, Stark RI, Garland M. Molecular cloning of the baboon UDP-glucuronosyltransferase 1A gene family: Evolution of the primate UGT1 locus and relevance for models of human drug metabolism. 2007. Pharmacogenetics and Genomics 17(1):11-24.
96. Cavalier-Smith T, Chao EE, Stechmann A, Oates B, Nikolaev S. Planomonadida ord. nov. (Apusozoa): ultrastructural affinity with Micronuclearia podoventralis and deep divergences within Planomonas gen. nov.. 2008. Protist 159(4):535-562.
97. Cavalier-Smith T, Lewis R, Chao EE, Oates B, Bass D. Morphology and phylogeny of Sainouron acronematica sp. n. and the ultrastructural unity of Cercozoa. 2008. Protist 159(4):591-620.
98. Cech G, Csuzdi C, Marialigeti K. Remarks on the molecular phylogeny of the genus Dendrobaena (sensu Pop 1941) based on the investigation of 18S rDNA sequences. 2006. Advances in Earthworm Taxonomy II, Univ. Press, Cluj, pp. 85-98.
99. Cetre-Sossah C, Zeller H, Grandadam M, Caro V, Pettinelli F, Bouloy M, ... Albina E. Genome analysis of Rift Valley fever virus, Mayotte. 2012. Emerging infectious diseases 18(6):969.
100. Charlat S, Duplouy A, Hornett EA, Dyson EA, Davies N, Roderick GK, Wedell N, Hurst GD. The joint evolutionary histories of Wolbachia and mitochondria in Hypolimnas bolina. 2009. BMC Evol. Biol. 9:64.
101. Charruau P, Fernandes C, Orozco-Terwengel P, Peters J, Hunter L, Ziaie H, Jourabchian A, Jowkar H, Schaller G, Ostrowski S, Vercammen P, Grange T, Schlotterer C, Kotze A, Geigl EM, Walzer C, Burger PA. Phylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolates. 2011. Mol. Ecol. 20(4):706-724.
102. Cherian SS, Walimbe AM, Jadhav SM, Gandhe SS, Hundekar SL, Mishra AC, Arankalle VA. Evolutionary rates and timescale comparison of Chikungunya viruses inferred from the whole genome/E1 gene with special reference to the 2005-07 outbreak in the Indian subcontinent. 2009. Infect. Genet. Evol. 9(1):16-23.
103. Chiachio MC, Oliveira C, Montoya-Burgos JI. Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae). 2008. Mol. Phylogenet. Evol. 49(2):606-617.
104. Cocquyt E, Gile GH, Leliaert F, Verbruggen H, Keeling PJ, et al.. Complex phylogenetic distribution of a non-canonical genetic code in green algae. 2010. BMC Evolutionary Biology 10(1):327.
105. Cocquyt E, Verbruggen H, Leliaert F, De Clerck O. Evolution and cytological diversification of the green seaweeds (Ulvophyceae). 2010. Mol. Biol. Evol. 27(9):2052-2061.
106. Cocquyt E, Verbruggen H, Leliaert F, Zechman FW, Sabbe K, De Clerck O. Gain and loss of elongation factor genes in green algae. 2009. BMC Evol. Biol. 9(1):39.
107. Colleoni C, Linka M, Deschamps P, Handford MG, Dupree P, Weber AP, Ball SG. Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis. 2010. Mol. Biol. Evol. 27(12):2691-2701.
108. Collins RA. Borna disease virus and mental illness. 2004. The Biomedical Scientist, November 2004.
109. Colson P, Yutin N, Shabalina SA, Robert C, Fournous G, La Scola B, Raoult D, Koonin EV. Viruses with more than 1,000 genes: mamavirus, a new Acanthamoeba polyphaga mimivirus strain, and reannotation of mimivirus genes. 2011. Genome Biol. Evol. 3:737-742.
110. Correa PG, Oguiura N. Phylogenetic analysis of ß-defensin-like genes of Bothrops, Crotalus and Lachesis snakes. 2013. Toxicon 0(0):???-???.
111. Corsaro D, Michel R, Walochnik J, Muller KD, Greub G. Saccamoeba lacustris, sp. nov. (Amoebozoa: Lobosea: Hartmannellidae), a new lobose amoeba, parasitized by the novel chlamydia 'Candidatus Metachlamydia lacustris' (Chlamydiae: Parachlamydiaceae). 2010. Eur. J. Protistol. 46(2):86-95.
112. Corsaro D, Venditti D. Detection of Chlamydiae from freshwater environments by PCR, amoeba coculture and mixed coculture. 2009. Research in Microbiology 160(8):547-552.
113. Corsaro D, Venditti D. Phylogenetic evidence for a new genotype of Acanthamoeba (Amoebozoa, Acanthamoebida). 2010. Parasitol. Res. 0(0):???-???.
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